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Nci Gdc Data Portal

Link van Nci Gdc Data Portal pagina wordt hieronder gegeven. Pagina's met betrekking tot Nci Gdc Data Portal worden ook vermeld.

Laatst bijgewerkt: 2021-04-26 06:01:02

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Home | NCI Genomic Data Commons

The NCI's Genomic Data Commons (GDC) provides the cancer research community with a unified data repository that enables data sharing across cancer genomic studies in support of precision medicine. The GDC supports several cancer genome programs at the NCI Center for Cancer Genomics (), including The Cancer Genome Atlas and Therapeutically Applicable Research to Generate Effective Treatments ().
Url: https://gdc.cancer.gov/
Home | NCI Genomic Data Commons

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Toegevoegd door: Warwick Brown

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GDC Reference Files | NCI Genomic Data Commons

Reference files used by the GDC data harmonization and generation pipelines are provided below. MD5 checksums are provided for verifying file integrity after download. Additional files are also included to allow for reproduction of GDC pipeline analyses.
Url: https://gdc.cancer.gov/about-data/gdc-data-processing/gdc-reference-files
GDC Reference Files | NCI Genomic Data Commons

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Toegevoegd door: Pamela Ellerman

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Viewer - GDC Docs

Data Dictionary Viewer. The GDC data dictionary viewer is a user-friendly interface for accessing the GDC Data Dictionary.
Url: https://docs.gdc.cancer.gov/Data_Dictionary/viewer/
Viewer - GDC Docs

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Toegevoegd door: Gary Raymer

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File Format: MAF - GDC Docs

GDC MAF Format v.1.0.0 Introduction. Mutation Annotation Format (MAF) is a tab-delimited text file with aggregated mutation information from VCF Files and are generated on a project-level. MAF files are produced through the Somatic Aggregation Workflow.The GDC produces MAF files at two permission levels: protected and somatic (or open-access). One MAF file is produced per variant calling ...
Url: https://docs.gdc.cancer.gov/Data/File_Formats/MAF_Format/
File Format: MAF - GDC Docs

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Toegevoegd door: Dominic Di Pietro

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Welcome to The iHMP Data Portal | HMP

Code for this website is provided by the NCI Genomic Data Commons (GDC) which was developed by the University of Chicago and the Ontario Institute of Cancer Research (OICR). {{corec.config['site-wide']['footer-link-text']}} The data portal for data generated from the Human Microbiome Project and Integrative Human Microbiome Project Skip to Main ...
Url: https://portal.hmpdacc.org/
Welcome to The iHMP Data Portal | HMP

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TCGA整合分析利器-GDC，太好用了！ - 知乎

今天小编就来给不太了解GDC的小伙伴简单介绍一下：TCGA的整合分析利器——GDC（Genomic Data Commons）。 GDC相当于替代了TCGA Data Portal 这个网站，但它不只包含TCGA的数据，还有TARGET、CGCI及其他CCG计划的数据，并对数据重新进行了整合分析，可以提供统一的癌症基因组数据。
Url: https://zhuanlan.zhihu.com/p/62844801
TCGA整合分析利器-GDC，太好用了！ - 知乎

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The Cancer Genome Atlas - Data Types Collected …

Questions about locating or accessing data should be directed to the GDC support team. Resources for TCGA users, including notes for users of the archived TCGA Data Portal and Data Access Matrix are also available. Experimental protocols for each platform can be found in individual publications.
Url: https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga/using-tcga/types
The Cancer Genome Atlas - Data Types Collected …

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Toegevoegd door: Kristy Scarfo

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TCGA数据下载—TCGAbiolinks包参数详解 - 组学大 …

如果在GDC Data Portal，这个参数不用设置. 9 barcode. A list of barcodes to filter the files to download，可以指定要下载的样品，例如： barcode = c "TCGA-14-0736-02A-01R-2005-01" "TCGA-06-0211-02A-02R-2005-01" 10 data.format
Url: https://www.omicsclass.com/article/1060
TCGA数据下载—TCGAbiolinks包参数详解 - 组学大 …

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TCGA-LUAD - The Cancer Imaging Archive (TCIA) …

GDC Data Portal - Clinical and Genomic Data. The GDC Data Portal has extensive clinical and genomic data, which can be matched to the patient identifiers on the images here in TCIA. Below is a snapshot of clinical data extracted on 1/5/2016. TCGA-LUAD Clinical Data.zip; Explanations of the clinical data can be found on the Biospecimen Core Resource Clinical Data Forms linked below:
Url: https://wiki.cancerimagingarchive.net/display/Public/TCGA-LUAD
TCGA-LUAD - The Cancer Imaging Archive (TCIA) …

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Toegevoegd door: National Cancer Institute

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The GDC Data Portal - Video Guides to the Genomic Data Commons

The GDC Data Portal - Video Guides to the Genomic Data Commons

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Querying and Downloading Data with the Data Portal and Transfer Tool: Genomic Data Commons Workshop

Querying and Downloading Data with the Data Portal and Transfer Tool: Genomic Data Commons Workshop

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Genomic Data Commons GDC Data Portal

Genomic Data Commons GDC Data Portal

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GDC Data Download and Upload Strategies – November 29, 2021 GDC Monthly Webinar

GDC Data Download and Upload Strategies – November 29, 2021 GDC Monthly Webinar

Toegevoegd door: NCI Scientific Events and Resources

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GDC Data Submission Demonstration – January 27, 2020 GDC Monthly Webinar

GDC Data Submission Demonstration – January 27, 2020 GDC Monthly Webinar

Toegevoegd door: National Cancer Institute

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The GDC Data Transfer Tool – Video Guides to the Genomic Data Commons

The GDC Data Transfer Tool – Video Guides to the Genomic Data Commons

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Obtaining Access to Controlled Data in the GDC – January 31, 2022 GDC Monthly Webinar

Obtaining Access to Controlled Data in the GDC – January 31, 2022 GDC Monthly Webinar

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An Overview of the Genomic Data Commons – July 25, 2019 GDC Monthly Webinar

An Overview of the Genomic Data Commons – July 25, 2019 GDC Monthly Webinar

Toegevoegd door: NCI Scientific Events and Resources

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GDC Data Analysis, Visualization, and Exploration (DAVE) Tools – August 26, 2019 GDC Monthly Webinar

GDC Data Analysis, Visualization, and Exploration (DAVE) Tools – August 26, 2019 GDC Monthly Webinar

Toegevoegd door: NCI Scientific Events and Resources

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GDC API and Applications – December 16, 2019 GDC Monthly Webinar

GDC API and Applications – December 16, 2019 GDC Monthly Webinar
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