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Gdc Data Portal Repository

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Laatst bijgewerkt: 2022-02-06 18:38:39

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Home | NCI Genomic Data Commons

The NCI's Genomic Data Commons (GDC) provides the cancer research community with a unified repository and cancer knowledge base that enables data sharing across cancer genomic studies in support of precision medicine. The GDC supports several cancer genome programs at the NCI Center for Cancer Genomics (), including The Cancer Genome Atlas and Therapeutically …
Url: https://gdc.cancer.gov/
Home | NCI Genomic Data Commons

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GDC Data Transfer Tool | NCI Genomic Data Commons

The GDC Data Transfer Tool provides an optimized method of transferring data to and from the GDC and enables resumption of interrupted transfers. The GDC Data Transfer Tool consists of: GDC Data Transfer Tool Client – A command-line tool supporting both GDC data downloads and submissions. Recommended for users with more command line ...
Url: https://gdc.cancer.gov/access-data/gdc-data-transfer-tool
GDC Data Transfer Tool | NCI Genomic Data Commons

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Data Transfer Tool Command Line Documentation - GDC Docs

A convenient way to download multiple files from the GDC is to use a manifest file generated by the GDC Data Portal. After generating a manifest file (see Preparing for Data Download and Upload for instructions), initiate the download using the GDC Data Transfer Tool by supplying the -m or --manifest option, followed by the location and name of ...
Url: https://docs.gdc.cancer.gov/Data_Transfer_Tool/Users_Guide/Data_Download_and_Upload/
Data Transfer Tool Command Line Documentation - GDC Docs

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GDC Docs

NCI Genomic Data Commons (GDC) Documentation. A place where researchers, data submitters and developers can find detailed information on GDC processes and tools.
Url: https://docs.gdc.cancer.gov/
GDC Docs

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Data Portal | Office of Cancer Clinical Proteomics Research

Genomic Data Commons (GDC) provides the cancer research community with a unified repository and cancer knowledge base that enables data sharing across cancer genomic studies in support of precision medicine. The CPTAC genomic data can be found on the GDC. Please apply to dbGaP to request access to protected CPTAC genomics data.
Url: https://proteomics.cancer.gov/data-portal
Data Portal | Office of Cancer Clinical Proteomics Research

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Data Access | Office of Cancer Genomics

The Genomic Data Commons (GDC) is a data repository that accepts and standardizes genomic, clinical and biospecimen data from cancer research programs and enables data sharing. The GDC provides a platform for efficient querying, analyzing, and downloading harmonized clinical, biospecimen, and sequence data across multiple projects.
Url: https://www.ocg.cancer.gov/data/data-access
Data Access | Office of Cancer Genomics

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GDC Data Portal (TCGA) のデータを取得する | BioTech ラボ・ …

Nov 21, 2020 · Contents. 1 GDC Data Portal (TCGA)について; 2 GDC Data Portal (TCGA)の基本的な使い方. 2.1 例1:乳がんの症例を探してみる; 2.2 例2:全乳がん症例の遺伝子発現定量値を取得する; 3 カートの便利な使い方. 3.1 カートに入れたデータに付随する情報や臨床データを取得する; 3.2 GDC Data Transfer Toolを用いて ...
Url: https://biotech-lab.org/articles/6985
GDC Data Portal (TCGA) のデータを取得する | BioTech ラボ・ …

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Open Domain-Specific Data Sharing Repositories

Feb 01, 2022 · The VDJServer Community Data Portal (CDP) is a data repository within the AIRR Data Commons (ADC), which is an internationally distributed set of data repositories for public query and download of AIRR-seq data. The ADC contains post-processed, annotated sequences and study metadata that conforms to the AIRR Community Data Standard, and ...
Url: https://www.nlm.nih.gov/NIHbmic/domain_specific_repositories.html
Open Domain-Specific Data Sharing Repositories

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Frequently Asked Questions - cBioPortal

No, the portal only contains gene-level data. Data for different isoforms of a given gene are merged. Raw and probe-level data for data sets are available via NCBI GEO, dbGaP or through the GDC. See the cancer type description on the main query page or refer to the original publication for links to the raw data.
Url: https://docs.cbioportal.org/1.-general/faq
Frequently Asked Questions - cBioPortal

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Accessing TCGA data from GDC portal

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The GDC Data Portal - Video Guides to the Genomic Data Commons

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Querying and Downloading Data with the Data Portal and Transfer Tool: Genomic Data Commons Workshop

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Genomic Data Commons GDC Data Portal

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GDC Data Download and Upload Strategies – November 29, 2021 GDC Monthly Webinar

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GDC Data Analysis, Visualization, and Exploration (DAVE) Tools – August 26, 2019 GDC Monthly Webinar

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GDC Data Transfer Tool user interface

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GDC Data Transfer Tool Client

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Spatial Data Repository: Data Download

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GDC Data Submission – November 25, 2019 GDC Monthly Webinar