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Cbioportal R Package

Link van Cbioportal R Package pagina wordt hieronder gegeven. Pagina's met betrekking tot Cbioportal R Package worden ook vermeld.

Laatst bijgewerkt: 2022-02-05 13:02:17

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Toegevoegd door: Elke Pierce

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Bioconductor - cBioPortalData

Bioconductor version: Release (3.14) The cBioPortalData package takes compressed resources from repositories such as cBioPortal and assembles a MultiAssayExperiment object with Bioconductor classes. Maintainer: Marcel Ramos marcel.ramos at roswellpark.org. Citation (from within R, enter citation ("cBioPortalData") ):
Url: https://bioconductor.org/packages/release/bioc/html/cBioPortalData.html
Bioconductor - cBioPortalData

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Toegevoegd door: Joshua Pryor

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cBioPortalData: User Start Guide - Bioconductor

26-10-2021 · The cBioPortalData package provides an R interface for accessing the cBioPortal study data within the Bioconductor ecosystem. It downloads study data from the cBioPortal API (the full API specification can be found here https://cbioportal.org/api) and uses Bioconductor infrastructure to cache and represent the data.
Url: https://www.bioconductor.org/packages/release/bioc//vignettes/cBioPortalData/inst/doc/cBioPortalData.html
cBioPortalData: User Start Guide - Bioconductor

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Toegevoegd door: Amy Summers

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cBioPortalData source: R/cBioPortal.R - rdrr.io

Try the cBioPortalData package in your browser library (cBioPortalData) help (getDataByGenePanel) Run (Ctrl-Enter) Any scripts or data that you put into this service are public. cBioPortalData documentation built on April 17, 2021, 6:07 p.m.
Url: https://rdrr.io/bioc/cBioPortalData/src/R/cBioPortal.R
cBioPortalData source: R/cBioPortal.R - rdrr.io

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Toegevoegd door: Brad Baker Photography

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CBioPortal and cgdsr: An Introduction | R-bloggers

11-01-2016 · Additionally, the slides provide introductory material for the usage of CBioPortal from R using the cgdsr package. cgdsr simplifies access to the web application programming interface (API) provided by the project. This is a REST-based API, that allows software to query the database using parameters appended onto the URL.
Url: https://www.r-bloggers.com/2016/01/cbioportal-and-cgdsr-an-introduction/
CBioPortal and cgdsr: An Introduction | R-bloggers

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Toegevoegd door: Michael Schlosser

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cBioPortalData: User Start Guide - Waldron Lab

The cBioPortalData package provides an R interface for accessing the cBioPortal study data within the Bioconductor ecosystem. It downloads study data from the cBioPortal API (the full API specification can be found here https://cbioportal.org/api) and uses Bioconductor infrastructure to cache and represent the data.
Url: https://waldronlab.io/cBioPortalData/articles/cBioPortalData.html
cBioPortalData: User Start Guide - Waldron Lab

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Toegevoegd door: Sam Pridham

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GitHub - cBioPortal/cgdsr: R-Based API for accessing the ...

15-12-2020 · The package provides a basic set of R functions for querying the Cancer Genomics Data Server (CGDS), hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC). Information Homepage Install cgdsr Development Version from GitHub
Url: https://github.com/cBioPortal/cgdsr
GitHub - cBioPortal/cgdsr: R-Based API for accessing the ...

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Toegevoegd door: David Feeney

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Exposes and makes available data from the cBioPortal web ...

The cBioPortalData R package aims to import cBioPortal datasets as MultiAssayExperiment objects into Bioconductor. Some of the features of the package include: The use of the MultiAssayExperiment integrative container for coordinating and representing the data.
Url: https://waldronlab.io/cBioPortalData/index.html
Exposes and makes available data from the cBioPortal web ...

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Toegevoegd door: Jack Traves

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GitHub - waldronlab/cBioPortalData: Integrate the cancer ...

The cBioPortalData R package aims to import cBioPortal datasets as MultiAssayExperiment objects into Bioconductor. Some of the features of the package include: The use of the MultiAssayExperiment integrative container for coordinating and representing the data.
Url: https://github.com/waldronlab/cBioPortalData
GitHub - waldronlab/cBioPortalData: Integrate the cancer ...

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cBioPortal for Cancer Genomics::R/MATLAB

CGDS-R Package Description The CGDS-R package provides a basic set of functions for querying the Cancer Genomic Data Server (CGDS) via the R platform for statistical computing. Maintained by Anders Jacobsen at the Computational Biology Center, MSKCC. Documentation CGDS-R Package on CRAN. The CGDS-R reference manual.
Url: https://www.personalizedoncogenomics.org/cbioportal/cgds_r.jsp
cBioPortal for Cancer Genomics::R/MATLAB

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Toegevoegd door: cBioPortal

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cBioPortal Webinar 1: Introduction

cBioPortal Webinar 1: Introduction

Toegevoegd door: cBioPortal

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The cBioPortal and OncoKB: Making complex cancer genomics data accessible and interpretable

The cBioPortal and OncoKB: Making complex cancer genomics data accessible and interpretable

Toegevoegd door: Bioconductor

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Multi omic Integration of cBioPortal and TCGA data with MultiAssayExperiment

Multi omic Integration of cBioPortal and TCGA data with MultiAssayExperiment

Toegevoegd door: Farhan Haq

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Cancer Genomics (Part 3): Easy guide to access RNA sequencing data of cancer (Example: Cbioportal)

Cancer Genomics (Part 3): Easy guide to access RNA sequencing data of cancer (Example: Cbioportal)

Toegevoegd door: Jesse Chan

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Biostatistics practice: cBioportal data retrieval and Kaplan-Meir survival analysis

Biostatistics practice: cBioportal data retrieval and Kaplan-Meir survival analysis

Toegevoegd door: cBioPortal

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cBioPortal Webinar 5: API & R Client

cBioPortal Webinar 5: API & R Client

Toegevoegd door: CORBEL

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Data-integration platform for cancer research: cBioportal demo

Data-integration platform for cancer research: cBioportal demo

Toegevoegd door: Jesse Chan

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Biostatistics practice: TCGA breast cancer dataset and Kaplan-Meir survival analysis

Biostatistics practice: TCGA breast cancer dataset and Kaplan-Meir survival analysis

Toegevoegd door: R Consortium

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An R package to flexibly generate simulation model flow diagrams

An R package to flexibly generate simulation model flow diagrams

Toegevoegd door: Certara

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Simcyp-R Package (V21)

Simcyp-R Package (V21)
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