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Cbioportal Mrna

Link van Cbioportal Mrna pagina wordt hieronder gegeven. Pagina's met betrekking tot Cbioportal Mrna worden ook vermeld.

Laatst bijgewerkt: 2022-02-05 00:38:36

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Toegevoegd door: Robert Norton

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Integrative cBioPortal Analysis Revealed Molecular ...

29-06-2021 · More precisely, the RNASeq V2 data in cBioPortal matches the rsem.genes.normalized_results file from TCGA. cBioPortal mRNA expression data are calculated as relative expression of a specific gene in a tumor sample to the gene’s expression distribution in a reference (all samples that are diploid for the gene in question) population of samples .
Url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8312221/
Integrative cBioPortal Analysis Revealed Molecular ...

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Toegevoegd door: Bruce Ward

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cBioPortal: A Web Platform of Gene-Based Data Exploration ...

08-03-2019 · The cBioPortal is a web application platform that facilitates data exploration and analysis through the use of a variety of visualization and analytical tools. Some of the tools in cBioPortal, such as the network mapper Cytoscape. , were developed by external sources, and some were developed by the cBio engineers themselves.
Url: https://ocg.cancer.gov/e-newsletter-issue/issue-10/cbioportal-web-platform-gene-based-data
cBioPortal: A Web Platform of Gene-Based Data Exploration ...

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Toegevoegd door: Wendy Read

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cBioPortal for Cancer Genomics

Colorectal Adenocarcinoma Triplets (MSKCC, Genome Biol 2014) 138 samples. Colorectal Cancer (MSK, Gastroenterology 2020) 471 samples. Disparities in metastatic colorectal cancer between Africans and Americans (MSK, 2020) 64 samples. Metastatic Colorectal Cancer (MSKCC, Cancer Cell 2018) 1134 samples.
Url: https://www.cbioportal.org/
cBioPortal for Cancer Genomics

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Toegevoegd door: Andrew Benda

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cbioportal/FAQ.md at master · cBioPortal/cbioportal · GitHub

cBioPortal supports Onco Query Language (OQL) which can be used to query over/under expression of a gene. When writing a query, select an mRNA expression profile. By default, samples with expression z-scores 2 or -2 in any queried genes are considered altered.
Url: https://github.com/cBioPortal/cbioportal/blob/master/docs/FAQ.md
cbioportal/FAQ.md at master · cBioPortal/cbioportal · GitHub

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Toegevoegd door: Cj Koay

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Opposing effects of BRCA1 mRNA expression on patient ...

Breast cancer (BC) and colorectal cancer (CRC) are common and show poor survival in advanced stages. Using The Cancer Genome Atlas (TCGA) computational tool cBioPortal, we evaluated overall patient survival in BRCA1 mRNA-low versus -high cohorts (-1.29 versus 1.05 SD from mean BRCA1 expressi …
Url: https://pubmed.ncbi.nlm.nih.gov/34611475/
Opposing effects of BRCA1 mRNA expression on patient ...

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Toegevoegd door: Heather Pritchard

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【工具】从cbioportal下载TCGA mRNA数据比较KRAS突变和WT - …

14 人 赞同了该文章. 今天给大家介绍一个利用cbioportal平台下载TCGA基因表达数据并进行比较的方法。. 这个方法不需要R可以直接操作。. 首先查看一下你要的癌症有没有RNA数据，打开网站：. 这里我们查一下肠癌，搜索colorectal。. 从最右边的RNA-Seq一栏中，我们可以 ...
Url: https://zhuanlan.zhihu.com/p/75763965
【工具】从cbioportal下载TCGA mRNA数据比较KRAS突变和WT - …

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Toegevoegd door: Leone Wode

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Analysis of the effect of NEKs on the prognosis of ...

01-02-2022 · Overexpression of NEK mRNA in NSCLC. We used the Oncomine database to measure the mRNA expression levels of NEKs in 20 cancer tissues. Results showed that there was overexpression of NEK2/4/6/8 ...
Url: https://www.nature.com/articles/s41598-022-05728-4
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Integrated analysis of gene expression and DNA methylation ...

Protein-protein interaction (PPI) networks were built and analysed for hypermethylated and hypermethylated differentially expressed genes using Cytoscape software and Mcode app. GEPIA and cBioPortal platforms were used to validate the expression of the hub genes and the correlation between their mRNA expressions and methylation levels.
Url: https://pubmed.ncbi.nlm.nih.gov/32192517/
Integrated analysis of gene expression and DNA methylation ...

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Toegevoegd door: Syed Umar Bokhari

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Identification of tumor antigens and immune subtypes of ...

08-03-2021 · The mRNA cancer vaccines represent promising novel immunotherapy to treat malignancies because both tumor-specific and non-specific antigens are expressed in cancerous cells. Both of them could be used as mRNA vaccine targets, resulting in the regression of the tumor in both preclinical models and patients [25–27].
Url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7938044/
Identification of tumor antigens and immune subtypes of ...

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Toegevoegd door: NCI Scientific Events and Resources

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Introduction to cBioPortal for Cancer Genomics

Introduction to cBioPortal for Cancer Genomics

Toegevoegd door: cBioPortal

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cBioPortal Webinar 1: Introduction

cBioPortal Webinar 1: Introduction

Toegevoegd door: cBioPortal

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cBioPortal Webinar 2: Mutation Details & Patient View

cBioPortal Webinar 2: Mutation Details & Patient View

Toegevoegd door: Farhan Haq

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Cancer Genomics (Part 3): Easy guide to access RNA sequencing data of cancer (Example: Cbioportal)

Cancer Genomics (Part 3): Easy guide to access RNA sequencing data of cancer (Example: Cbioportal)

Toegevoegd door: cBioPortal

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cBioPortal: Comparing samples based on expression level of a gene

cBioPortal: Comparing samples based on expression level of a gene

Toegevoegd door: Cristi Vlad

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Cbioportal - Tool for Cancer Genomics Analysis [Overview]

Cbioportal - Tool for Cancer Genomics Analysis [Overview]

Toegevoegd door: cBioPortal

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cBioPortal: Using Onco Query Language (OQL) to query based on the expression level of genes

cBioPortal: Using Onco Query Language (OQL) to query based on the expression level of genes

Toegevoegd door: cBioPortal

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cBioPortal Webinar 4: Group Comparison

cBioPortal Webinar 4: Group Comparison

Toegevoegd door: Jesse Chan

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Biostatistics practice: cBioportal data retrieval and Kaplan-Meir survival analysis

Biostatistics practice: cBioportal data retrieval and Kaplan-Meir survival analysis

Toegevoegd door: Hatem Jasim

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cBioPortal for cancer Genomics

cBioPortal for cancer Genomics
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