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Cbioportal Methylation

Link van Cbioportal Methylation pagina wordt hieronder gegeven. Pagina's met betrekking tot Cbioportal Methylation worden ook vermeld.

Laatst bijgewerkt: 2022-02-05 12:52:02

Toegevoegd door: Robert Norton

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Integrative cBioPortal Analysis Revealed Molecular ...

29-06-2021 · All cBioPortal data have the same clinical criteria and equally processed and normalized data, enabling comparative analysis of samples between different studies. After creating the virtual study, CNA, methylation data, mRNA expression, and protein expression of selected genes were downloaded and examined like a classical study.
Url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8312221/
Integrative cBioPortal Analysis Revealed Molecular ...

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Toegevoegd door: Dale Exon

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Frequently Asked Questions - cBioPortal

the goal of cbioportal is to significantly lower the barriers between complex genomic data and cancer researchers by providing rapid, intuitive, and high-quality access to molecular profiles and clinical attributes from large-scale cancer genomics projects, and therefore to empower researchers to translate these rich data sets into biologic …
Url: https://docs.cbioportal.org/1.-general/faq
Frequently Asked Questions - cBioPortal

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Toegevoegd door: Tom Park

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Integration and Analysis of CPTAC Proteomics Data in the ...

Here, we present the integration of the CPTAC mass spectrometry-based proteomics data into the cBioPortal, consisting of 77 breast, 95 colorectal, and 174 ovarian tumors that already have been profiled by TCGA for mutations, copy number alterations, gene expression, and DNA methylation.
Url: https://pubmed.ncbi.nlm.nih.gov/31308250/
Integration and Analysis of CPTAC Proteomics Data in the ...

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Toegevoegd door: Joshua Pryor

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cBioPortalData: User Start Guide - Bioconductor

26-10-2021 · The cBioPortal for Cancer Genomics website is a great resource for interactive exploration of study datasets. However, it does not easily allow the analyst to obtain and further analyze the data. We’ve developed the cBioPortalData package to fill this need to programmatically access the data resources available on the cBioPortal.
Url: https://www.bioconductor.org/packages/release/bioc//vignettes/cBioPortalData/inst/doc/cBioPortalData.html
cBioPortalData: User Start Guide - Bioconductor

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Toegevoegd door: Mohammad I Mirshahi

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STEP-BY-STEP GUIDE cBioPortal - Health-RI

member of the cBioPortal data team, who will gladly answer any questions you may have. You can view demonstration studies in cBioPortal by visiting https: ... (e.g. segmented data or methylation data). Prepare a tsv file according to the instructions from this link. If you want to see examples, you can find demonstration studies by visiting: ...
Url: https://www.health-ri.nl/sites/healthri/files/2020-06/StepbystepGuide-cBioPortal.pdf
STEP-BY-STEP GUIDE cBioPortal - Health-RI

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Toegevoegd door: Peter Sneesby

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Integrated analysis of gene expression and DNA methylation ...

Protein-protein interaction (PPI) networks were built and analysed for hypermethylated and hypermethylated differentially expressed genes using Cytoscape software and Mcode app. GEPIA and cBioPortal platforms were used to validate the expression of the hub genes and the correlation between their mRNA expressions and methylation levels.
Url: https://pubmed.ncbi.nlm.nih.gov/32192517/
Integrated analysis of gene expression and DNA methylation ...

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Toegevoegd door: Harry Kefford

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cBioPortal Hands-on Introduction - Health-RI

cBioPortal Hands-on Introduction Version 02/December/2019. What is cBioPortal for Cancer Genomics? The tool cBioPortal is an open-source software, which is hosted by HealthRI as a data integration platform - where processed data from different research studies have been made available for view and query. What is the purpose of this hand-out?
Url: https://www.health-ri.nl/sites/healthri/files/2020-03/cBioPortal%20Manual%2002Dec2019.pdf
cBioPortal Hands-on Introduction - Health-RI

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Toegevoegd door: Hulsta-werke Huls Gmbh & Co. Kg

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cBioPortal - Health-RI

The Health-RI cBioPortal provides a web-based resource for researchers to explore, visualize, analyze, and share multidimensional cancer genomics data sets as well as other studies with multidimensional genomics data. Visualizations include survival analysis, networks analysis, co-expression and the onco-print (gene-print).
Url: https://www.health-ri.nl/services/cbioportal
cBioPortal - Health-RI

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Toegevoegd door: Wendy Read

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cBioPortal for Cancer Genomics

Colorectal Adenocarcinoma Triplets (MSKCC, Genome Biol 2014) 138 samples. Colorectal Cancer (MSK, Gastroenterology 2020) 471 samples. Disparities in metastatic colorectal cancer between Africans and Americans (MSK, 2020) 64 samples. Metastatic Colorectal Cancer (MSKCC, Cancer Cell 2018) 1134 samples.
Url: https://www.cbioportal.org/
cBioPortal for Cancer Genomics

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Toegevoegd door: cBioPortal

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cBioPortal Webinar 1: Introduction

Toegevoegd door: cBioPortal

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cBioPortal Webinar 2: Mutation Details & Patient View

Toegevoegd door: cBioPortal

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cBioPortal: Comparing samples based on expression level of a gene

Toegevoegd door: Cristi Vlad

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Cbioportal - Tool for Cancer Genomics Analysis [Overview]

Toegevoegd door: cBioPortal

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cBioPortal Webinar 4: Group Comparison

Toegevoegd door: cBioPortal

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cBioPortal Webinar 5: API & R Client

Toegevoegd door: CORBEL

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Data-integration platform for cancer research: cBioportal demo

Toegevoegd door: cBioPortal

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cBioPortal Webinar 3: Expression Data Analysis

Toegevoegd door: cBioPortal

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cBioPortal: Filtering and adding clinical data to Mutations tab

Toegevoegd door: Oncoscholar

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cBioPortal Tutorial | Pathway Analysis | Hindi