Cbioportal Database

Volg deze eenvoudige stappen:

Stap 1. Ga naar pagina Cbioportal Database via onderstaande officiële link.
Stap 2. Log in met uw gebruikersnaam en wachtwoord. Het aanmeldingsscherm verschijnt na een succesvolle aanmelding.
Stap 3. Als je nog steeds geen toegang hebt tot Cbioportal Database , bekijk dan hier de opties voor probleemoplossing

Toegevoegd door: Wendy Read

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cBioPortal for Cancer Genomics

Colorectal Adenocarcinoma Triplets (MSKCC, Genome Biol 2014) 138 samples. Colorectal Cancer (MSK, Gastroenterology 2020) 471 samples. Disparities in metastatic colorectal cancer between Africans and Americans (MSK, 2020) 64 samples. Metastatic Colorectal Cancer (MSKCC, Cancer Cell 2018) 1134 samples.

Url: https://www.cbioportal.org/

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Toegevoegd door: Lauren Pullock

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Downloads - cBioPortal

The seed database is a MySQL dump for seeding a new instance of the cBioPortal. Instructions for loading the seed database can be found here. The seed database for human can be downloaded from cBioPortal Datahub. A mouse version can be found here.

Url: https://docs.cbioportal.org/5.2-datasets/downloads

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Toegevoegd door: Bruce Ward

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cBioPortal: A Web Platform of Gene-Based Data Exploration ...

08-03-2019 · The cBioPortal is a web application platform that facilitates data exploration and analysis through the use of a variety of visualization and analytical tools. Some of the tools in cBioPortal, such as the network mapper Cytoscape. , were developed by external sources, and some were developed by the cBio engineers themselves.

Url: https://ocg.cancer.gov/e-newsletter-issue/issue-10/cbioportal-web-platform-gene-based-data

cBioPortal: A Web Platform of Gene-Based Data Exploration ...

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Importing the Seed Database - cBioPortal

A cBioPortal seed database for human can be found on the datahub page. If you are looking for mouse, check this link. After download, the files can be unzipped by entering the following command: 1. gunzip *.sql.gz. Copied! Import the cBioPortal Seed Database.

Url: https://docs.cbioportal.org/2.1.2-deploy-without-docker/import-the-seed-database

Importing the Seed Database - cBioPortal

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Toegevoegd door: Belinda Quinn

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cBioPortal | The Hyve

cBioPortal was originally developed by Memorial Sloan-Kettering Cancer Center (MSKCC) in New York, and is currently further developed by an open-source community consisting of more than 30 active developers. The Hyve is among the top three contributors to the cBioPortal code base and the only service provider that is an integral part of the ...

Url: https://www.thehyve.nl/services/cbioportal

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GitHub - cBioPortal/cbioportal: cBioPortal for Cancer Genomics

25-03-2015 · cBioPortal. The cBioPortal for Cancer Genomics provides visualization, analysis, and download of large-scale cancer genomics data sets. For a short intro on cBioPortal, see these introductory slides.. If you would like to know how to setup a private instance of the portal and/or get set up for developing, see the documentation.For details on contributing code changes via …

Url: https://github.com/cBioPortal/cbioportal

GitHub - cBioPortal/cbioportal: cBioPortal for Cancer Genomics

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Frequently Asked Questions - cBioPortal

cBioPortal supports the annotation of variants from several different databases. These databases provide information about the recurrence of, or prior knowledge about, specific amino acid changes. For each variant, the number of occurrences of mutations at the same amino acid position present in the COSMIC database are reported.

Url: https://docs.cbioportal.org/1.-general/faq

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README - cBioPortal

README. Welcome to the documentation for cBioPortal! Below you can find an index of all available documentation to help you to deploy and maintain a local instance of cBioPortal, as well as information on how to upload data. Specific pages are also available for developers.

Url: https://docs.cbioportal.org/

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Deploy with Docker - cBioPortal

It will take a few minutes the first time to import the seed database and perform migrations if necessary. Each container outputs logs to the terminal. For each log you'll see the name of the container that outputs it (e.g. cbioportal_container or cbioportal_session_database_container).

Url: https://docs.cbioportal.org/2.1.1-deploy-with-docker-recommended/docker

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cBioPortal Webinar 1: Introduction

Toegevoegd door: Farhan Haq

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Cancer Genomics (Part 3): Easy guide to access RNA sequencing data of cancer (Example: Cbioportal)

Toegevoegd door: cBioPortal

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cBioPortal: Comparing samples based on expression level of a gene

Toegevoegd door: Cristi Vlad

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Cbioportal - Tool for Cancer Genomics Analysis [Overview]

Toegevoegd door: cBioPortal

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cBioPortal Webinar 4: Group Comparison

Toegevoegd door: cBioPortal

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cBioPortal Webinar 5: API & R Client

Toegevoegd door: cBioPortal

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cBioPortal Webinar 3: Expression Data Analysis

Toegevoegd door: Future omics Basic and Advanced Bioinformatics

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